docs: align all documentation with the new repo structure
Update agent protocols (.claude/agents, .github/agents), guides, runbooks and READMEs
to the post-restructure layout: .specify/{scripts,tests,security,config,templates,
governance,memory,level5-config} -> packages/casan-harness/...; docs/input +
golden-runs + traceability-map -> apps/okr/domain/...; drop AINative_OKR_CASAN5/ prefix.
Runtime-state paths (.specify/logs, .specify/agentops, .specify/level5/central-governance)
kept as-is. Historical evidence under docs/output/ left untouched (immutable run records).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Claude Opus 4.8
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@@ -60,7 +60,7 @@ You **MUST** consider the user input before proceeding (if not empty).
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## Outline
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1. Run `.specify/scripts/powershell/check-prerequisites.ps1 -Json -RequireTasks -IncludeTasks` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\''m Groot' (or double-quote if possible: "I'm Groot").
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1. Run `packages/casan-harness/scripts/powershell/check-prerequisites.ps1 -Json -RequireTasks -IncludeTasks` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\''m Groot' (or double-quote if possible: "I'm Groot").
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2. **Check checklists status** (if FEATURE_DIR/checklists/ exists):
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- Scan all checklist files in the checklists/ directory
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